ViralFlow
Installation
MacOS Installation
Installing Lima
Installing the Ubuntu instance
Start Ubuntu
Ubuntu Installation
Installing System Dependencies
Installing and Configuring Micromamba
Installing ViralFlow
Building the Containers
Dependencies
Conda
Singularity v3.11.4
Nextflow 22.04
Quick Start Guide
Customizing the snpEff Database
SARS-CoV-2 Mode
Custom Mode
Pangolin Update
Parameters
Parameter File
Parameter Reference
Output Files
Specific Outputs
Compiled Outputs
ViralFlow
Index
Index