ViralFlow
  • Installation
    • MacOS Installation
      • Installing Lima
      • Installing the Ubuntu instance
      • Start Ubuntu
    • Ubuntu Installation
      • Installing System Dependencies
      • Installing and Configuring Micromamba
      • Installing ViralFlow
      • Building the Containers
  • Dependencies
    • Conda
    • Singularity v3.11.4
    • Nextflow 22.04
  • Quick Start Guide
    • Customizing the snpEff Database
    • SARS-CoV-2 Mode
    • Custom Mode
    • Pangolin Update
  • Parameters
    • Parameter File
    • Parameter Reference
  • Output Files
    • Specific Outputs
    • Compiled Outputs
ViralFlow
  • Search

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